Downloads

The following software and graphics have been produced by our lab and may be downloaded and used free of charge by academic and other non-profit researchers. Please do provide correct credit to the source of the code and the associated scientific papers.


Artistic impression 1, Artistic impression 2, Experimental graphics, SI Movies 1-6, and SI Movies 7-12 produced from the work:

  • Wu et al, Symmetry and scale orient Min protein patterns in shaped bacterial sculptures. Nature Nanotechnology 10, 719–726 (2015) doi:10.1038/nnano.2015.126

  • Matlab codes for quantifying photobleaching of fluorescent labels on nucleoids and foci
    As described in:

    • Wu et al, Multi-color imaging of the bacterial nucleoid and division proteins with blue, orange, and near-infrared fluorescent proteins. Front. Microbiol. 6:607. doi: 10.3389/fmicb.2015.00607

    Transalyzer: Nanopore Signal Analysis Package for Matlab
    As described in:


    Dynamics of DNA supercoils (English)
    Dynamics of DNA supercoils (Dutch)
    As described in:

    • M. T. J. van Loenhout, M. V. de Grunt, C. Dekker. Science 1225810 Published online 13 September 2012 [DOI:10.1126/science.1225810]

    Mathematica code
    As described in:

    • I. De Vlaminck, T. Henighan, M.T.J. van Loenhout, D.R. Burnham, C. Dekker. PLoS ONE 7(8): e41432 (2012)

    Tracking software QItracker
    As described in:

    • M.T.J. van Loenhout, J. W.J. Kerssemakers, I. De Vlaminck and C. Dekker. Biophys. J.102, 2362 (2012)
    • I. De Vlaminck, T. Henighan, M.T.J. van Loenhout, D.R. Burnham, C. Dekker. PLoS ONE 7(8): e41432 (2012)