Downloads
The following software and graphics have been produced by our lab and may be downloaded and used free of charge by academic and other non-profit researchers. Please do provide correct credit to the source of the code and the associated scientific papers.
- Force vs DNA extension table: Attached are the data showing relative extension vs force that was exerted on DNA. These data were obtained in the presence of 30 nM Sytox Orange in 40 mM Tris-HCl, pH 8.0, 20 mM NaCl, and 0.4 mM EDTA. Find the data HERE
As described here:
- Artistic impression 1, Artistic impression 2, Experimental graphics, SI Movies 1-6, and SI Movies 7-12
produced from the work:- Wu et al, Symmetry and scale orient Min protein patterns in shaped bacterial sculptures. Nature Nanotechnology 10, 719–726 (2015) doi:10.1038/nnano.2015.126
- Matlab codes for quantifying photobleaching of fluorescent labels on nucleoids and foci
As described in:- Wu et al, Multi-color imaging of the bacterial nucleoid and division proteins with blue, orange, and near-infrared fluorescent proteins. Front. Microbiol. 6:607. doi: 10.3389/fmicb.2015.00607
- Transalyzer: Nanopore Signal Analysis Package for Matlab
As described in:- C. Plesa and C. Dekker. Data analysis methods for solid-state nanopores, Nanotechnology 26 (2015) 084003.
- Dynamics of DNA supercoils (English)
Dynamics of DNA supercoils (Dutch)
As described in:- M. T. J. van Loenhout, M. V. de Grunt, C. Dekker. Science 1225810 Published online 13 September 2012 [DOI:10.1126/science.1225810]
- Mathematica code
As described in:- I. De Vlaminck, T. Henighan, M.T.J. van Loenhout, D.R. Burnham, C. Dekker. PLoS ONE 7(8): e41432 (2012)
- Tracking software QItracker
As described in:- M.T.J. van Loenhout, J. W.J. Kerssemakers, I. De Vlaminck and C. Dekker. Biophys. J.102, 2362 (2012)
- I. De Vlaminck, T. Henighan, M.T.J. van Loenhout, D.R. Burnham, C. Dekker. PLoS ONE 7(8): e41432 (2012)
